Publications

2013

Basham, K.J., Kieffer, C., Shelton, D.N., Leonard, C.J., Bhonde, V.R., Vankayalapati, H., Milash, B., Bearss, D.J., Looper, R.E., and Welm, B.E. Chemical genetic screen reveals a role for desmosomal adhesion in mammary branching morphogenesis. J Biol Chem. 2013 Jan 25; 288 (4): 2261-70. PMCID: PMC3554898.

Xu Wang, Daniel Kopinke, Junji Lin, Adam D. McPherson, Robert N. Duncan, Hideo Otsuna, Enrico Moro, Kazuyuki Hoshijima, David J. Grunwald, Francesco Argenton, Chi-Bin Chien, L. Charles Murtaugh, Richard I. Dorsky (2012). Wnt Signaling Regulates Postembryonic Hypothalamic Progenitor Differentiation. Developmental Cell 23, 624-636. PMC 3445042

Schell JC & Rutter J. (2013). The long and winding road to the mitochondrial pyruvate carrier. Cancer and Metabolism. 1:6 doi:10.1186/2049-3002-1-6

M. D. Shapiro, Z. Kronenberg, C. Li, E.T. Domyan, H. Pan, M. Campbell, H. Tan, C.D. Huff, H. Hu, A.I. Vickrey, S.A. Nielsen, S.A. Stringham, E. Willerslev, M. T. P. Gilbert, M. Yandell, G. Zhang, J. Wang (2013). Genomic diversity and evolution of the head crest in the rock pigeon. Science 339: 1063-1067. PMID: 23371554

M.D. Shapiro, E.T. Domyan (2013) Quick guide: Domestic pigeons. Current Biology (in press).

2012

Bricker DK, Taylor EB, Schell JC, Orsak T, Boutron A, Chen YC, Cox JE, Cardon CM, Van Vranken JG, Dephoure N, Redin C, Boudina S, Gygi SP, Brivet M, Thummel CS, Rutter J. (2012). A mitochondrial pyruvate carrier required for pyruvate uptake in yeast, Drosophila, and humans. Science. 337(6090):96-100. doi: 10.1126/science.1218099. Epub 2012 May 24. PMID: 22628558

KA Frizzell, SG Rynearson, MM Metzstein (2012) Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6. RNA 18(8):1475-86. PMID: 22740637

2011

Wythe JD, Jurynec MJ, Urness LD, Jones CA, Milan DJ, Grunwald DJ, MacRae CA, Li DY Hadp1, a novel pleckstrin homology domain family member, is required for cardiac function in zebrafish. Disease Models and Mechanisms 2011 Accepted/In press.

Warf MB, Johnson WE, Bass BL. Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer. RNA. 2011 Apr;17(4):563-77. PMID:21307183

Drews GN, Wang D, Steffen JG, Schumaker KS, Yadegari R. Identification of genes expressed in the angiosperm female gametophyte. J Exp Bot. 2011 Mar;62(5):1593-9. PMID: 21118822

Aman A, Nguyen M, Piotrowski T. Wnt/β-catenin dependent cell proliferation underlies segmented lateral line morphogenesis. Dev Biol. 2011 Jan 15;349(2):470-82. PMID: 20974120

Zukor KA, Kent DT, Odelberg SJ. Meningeal cells and glia establish a permissive environment for axon regeneration after spinal cord injury in newts. Neural Dev. 2011 Jan 4;6(1):1. PMID: 21205291

2010

Rathore SS, Bend EG, Yu H, Hammarlund M, Jorgensen EM, Shen J. Syntaxin Nterminal peptide motif is an initiation factor for the assembly of the SNARESec1/ Munc18 membrane fusion complex. Proc Natl Acad Sci U S A. 2010 Dec

28;107(52):22399-406. PMID:21139055

Mackay DR, Makise M, Ullman KS. Defects in nuclear pore assembly lead to activation of an Aurora B-mediated abscission checkpoint. J Cell Biol. 2010 Nov 29;191(5):923-31. PMID:21098116

Zukor KA, Kent DT, Odelberg SJ. Fluorescent whole-mount method for visualizing three-dimensional relationships in intact and regenerating adult newt spinal cords. Dev Dyn. 2010 Nov;239(11):3048-57. PMID: 20931649

Wyatt C, Ebert A, Reimer MM, Rasband K, Hardy M, Chien CB, Becker T, Becker CG. Analysis of the astray/robo2 zebrafish mutant reveals that degenerating tracts do not provide strong guidance cues for regenerating optic axons. J Neurosci. 2010 Oct 13;30(41):13838-49. PMID: 20943924

Chen JL, Merl D, Peterson CW, Wu J, Liu PY, Yin H, Muoio DM, Ayer DE, West M, Chi JT. Lactic acidosis triggers starvation response with paradoxical induction of TXNIP through MondoA. PLoS Genet. 2010 Sep 2;6(9). pii: e1001093. PMID: 20844768

Pittman AJ, Gaynes JA, Chien CB. nev (cyfip2) is required for retinal lamination and axon guidance in the zebrafish retinotectal system. Dev Biol. 2010 Aug 15;344(2):784-94. PMID: 20537992

Mackay DR, Ullman KS, Rodesch CK. Time-lapse imaging of mitosis after siRNA transfection. J Vis Exp. 2010 Jun 6;(40). pii: 1878. doi: 10.3791/1878. PMID:20548280

Peterson CW, Stoltzman CA, Sighinolfi MP, Han KS, Ayer DE. Glucose controls nuclear accumulation, promoter binding, and transcriptional activity of the MondoA-Mlx heterodimer. Mol Cell Biol. 2010 Jun;30(12):2887-95. PMID: 20385767

Aman A, Piotrowski T. Cell migration during morphogenesis. Dev Biol. 2010 May 1;341(1):20-33. PMID: 19914236

Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, Hyman AA, Gerstein M, Mango SE, Kim SK, Waterston RH, Reinke V, Snyder M. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. PLoS Genet. 2010 Feb 19;6(2):e1000848. PMID:20174564

2009

Aman A, Piotrowski T. Multiple signaling interactions coordinate collective cell migration on the posterior lateral line primordium. Cell Adh Migr. 2009 Oct-Dec;3(4):365-8. PMID:19736513

Vázquez-Chona FR, Clark AM, Levine EM. Rlbp1 promoter drives robust Müller glial GFP expression in transgenic mice. Invest Ophthalmol Vis Sci. 2009 Aug;50(8):3996-4003. PMID:19324864

De La O JP, Murtaugh LC. Notch and Kras in pancreatic cancer: at the crossroads of mutation, differentiation and signaling. Cell Cycle. 2009 Jun 15;8(12):1860-4. PMID: 19440048

De La O JP, Murtaugh LC. Notch signaling: where pancreatic cancer and differentiation meet? Gastroenterology. 2009 May;136(5):1499-502. PMID:19327730

Mukhtasimova NPZ*, Lee WY*, Wang HL, Sine SM. Detection and trapping of intermediate states priming nicotinic receptor channel opening. Nature. 2009 May 21;459(7245):451-4.PMID:19339970 (*contributed equally)

Hammarlund M, Nix P, Hauth L, Jorgensen EM, Bastiani M. Axon regeneration requires a conserved MAP kinase pathway. Science. 2009 Feb 6;323(5915):802-6. Epub 2009 Jan 22. PMID:19164707

Jurrus E, Hardy M, Tasdizen T, Fletcher PT, Koshevoy P, Chien CB, et al. Axon tracking in serial block-face scanning electron microscopy. Med Image Anal. 2009;13(1):180-8. PMCID: 2597704

Sieber MH, Thummel CS. The DHR96 nuclear receptor controls triacylglycerol homeostasis in Drosophila. Cell Metab. 2009;10(6):481-90. PMCID: 2803078